PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 570aa    MW: 64037.2 Da    PI: 6.2262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2307genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.82.3e-3143129187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r++m++ +r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++++t+++fd+lea
  Gh_D05G2307  43 RWPRQETLALLKIRSDMDSLFRDSTLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTSKADGKTKTYRFFDELEA 129
                  8************************************************************************************85 PP

2trihelix1041.1e-32376461187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev aLi++r++++ +++++  k+plWee+s++mr  g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a
  Gh_D05G2307 376 RWPKVEVEALIKLRTNLDIKYQDNGPKGPLWEEISAAMRNLGYNRSAKRCKEKWENINKYFKKVKENNKTR-PEDSKTCPYFHQLDA 461
                  8********************************************************************97.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00540102IPR001005SANT/Myb domain
PROSITE profilePS500906.91142100IPR017877Myb-like domain
PfamPF138374.5E-2042129No hitNo description
CDDcd122031.17E-2542107No hitNo description
SMARTSM007172.3E-4373435IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4375432IPR009057Homeodomain-like
PROSITE profilePS500907.399375433IPR017877Myb-like domain
PfamPF138371.2E-22376462No hitNo description
CDDcd122031.65E-26376440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MESSMVEGSA EAATTVAGIH EGSEGEEDRG RVDEGDRSFG GNRWPRQETL ALLKIRSDMD  60
SLFRDSTLKG PLWEEVSRKL AELGYHRSAK KCKEKFENVY KYHKRTKDGR TSKADGKTKT  120
YRFFDELEAF QNLHSLHPLS PPKPQTPTPT SASVMNPTNV PQSHATVPSI NPTLSTQPVP  180
PLHSINPCFF NISSNLFSTS TSSSTTSNDD SYQGSSGKKR KWKEFFRRLT KEVIEKQEEL  240
QNKFLQTIEK CEQQRLAREE AWRVQEMARI NKEHELLVQE RSKAAAKDAA VFAFLQKVSG  300
QQPNTVQDNP QPQPQPPPPA QPMLAPLSTP PPPPPVQVQQ PKTHPPPTQA LNFDTSEMSN  360
GGNSAVSVSL SPSPSRWPKV EVEALIKLRT NLDIKYQDNG PKGPLWEEIS AAMRNLGYNR  420
SAKRCKEKWE NINKYFKKVK ENNKTRPEDS KTCPYFHQLD AIYKDKISKN GNSLATSSPY  480
GVKPDSRSTV PLMVRPEQQW PPPQGNNHQA ETVAMMEEEA DKGNVGHNNN HTQEEEEEEE  540
EEEDGDTEDE YEGNDFELVA KTAPIGSGGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.132500.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9640911e-127JX964091.1 Gossypium hirsutum clone NBRI_TRANS-360 microsatellite sequence.
GenBankJX9644121e-127JX964412.1 Gossypium hirsutum clone NBRI_TRANS-681 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446165.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X2
RefseqXP_012446164.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D2S8310.0A0A0D2S831_G
STRINGSolyc12g056510.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-134Trihelix family protein